Genomics Publications

The Genomics Facility appreciates the acknowledgment of the facility in your publications. This recognition is important for receiving continued support from CFI and other granting agencies. Funding from these grants has provided the following equipment and support.

  • 2100 Bioanalyzer --- donated by Agilent (2003)
  • 3730 Genetic Analyzer --- CFI (2004)
  • GenePix Professional 4200A Slide Scanner --- CFI (2005)
  • Salary support --- IOF (2006)
  • Step One Plus Real-Time PCR System --- CFI (2008)
  • QX200 Droplet Digital PCR Instrument --- NSERC(2016)

Publications Involving Work Performed in the Genomics Facility

May 2008 - April 2009

  1. Garner S, Madison BN, Bernier NJ and Neff BD. 2008. Juvenile growth and aggression in diploid and triploid Chinook salmon (Oncorhynchus tshawytscha).  J. Fish Biol. 73: 169-185

  2. Gong, X. and Bewley, J.D. (2008) A GAMYB-like gene in tomato and its expression during seed germination.  Planta 228, 563-572.

  3. Bassel, G.W., Mullen, R.T. and Bewley, J.D. (2008) procera is a putative DELLA mutant in tomato (Solanum lycopersicon): effects on the seed and vegetative plant.  J. Exp. Bot. 59, 585-593.

  4. Lee, H.J., and E.G. Boulding. 2009. Spatial and temporal population genetic structure of four northeastern Pacific marine gastropods (Littorina species): the effect of mode of larval development on variation at one mitochondrial and two nuclear genes.  Molecular Ecology 18, 2165–2184.

  5. Boulding, E.G. J. R deWaard, K. P. Ang and P. D. N. Hebert. 2009. Population genetic structure of the salmon louse, Lepeophtheirus salmonis (Krøyer) on wild and farmed salmonids around the Pacific coast of Canada. Aquacultural Research. 40(8): 973 – 979. {Mostly done at BIO except for some early sequences).

  6. Boulding, E.G., M. Culling, B. Glebe, P.R. Berg, S. Lien, and T. Moen. 2008. Conservation genomics of Atlantic salmon: SNPs associated with QTLs for adaptive trait differences in parr from four trans-Atlantic backcrosses. Heredity 101: 381–391.

  7. Alderman SL, Raine JC and Bernier NJ. 2008. Distribution and regional stressor-induced regulation of corticotrophin-releasing factor binding protein in rainbow trout (Oncorhynchus mykiss).  J. Neuroendocrinol. 20:347-358

  8. Reggeti F, Ackerley C, Bienzle D. CD134 and CXCR4 expression correspond to feline immunodeficiency virus infection of lymphocytes, macrophages and dendritic cells. J Gen Virol 89:277-287, 2008.

  9. Levy J, Crawford PC, Kusuhara H, Motokawa K, Gemma T, Watanabe R, Arai S, Bienzle D, Hohdatsu T. Differentiation of feline immunodeficiency virus vaccination, infection, or vaccination and infection in cats. J Vet Intern Med 22:330-334, 2008

  10. Vengust M, Baird J, van Dreumel T, Ackerley C, Bienzle D. Equid herpesvirus-2 associated oral and esophageal ulceration in a foal. J Vet Diagn Invest 20:811-815, 2008.

  11. Vengust M, Wen X, Bienzle D. Herpesvirus-associated neurological disease in a donkeyJ Vet DiagnInvest 20:820-823, 2008. 

  12. Localization and functional characterization of pulmonary bovine odorant binding protein.  G.B. Mitchell, M. E. Clark, R. LuJ. L. Caswell

  13. Jing, H., D. Cockburn, and A.J. Clarke (2009) Production and purification of the isolated family 2a carbohydrate binding module from Cellulomonas fimi.  Protein Expr. Purif. 64: 63-68.

  14. Legaree, B.A., and A.J. Clarke (2008) Interaction of penicillin-binding protein 2 with soluble lytic transglycosylase B1 in Pseudomonas aeruginosa.  J. Bacteriol. 190: 6922-6926.

  15. Scheurwater, E.M., and A.J. Clarke (2008) The C-terminal domain of Escherichia coli YfhD functions as a lytic transglycosylase.  J. Biol. Chem.  283: 8363-8373.

  16. Weadge, J.T., and A.J. Clarke (2008) Transacetylations of carbohydrates in organic solvent catalysed by O-acetylpeptidoglycan esterase from Neisseria gonorrhoeaeBiocatal. Biotransform.  26: 68-75.

  17. Scheurwater, E.M., C.W. Reid, and A.J. Clarke (2008) Lytic transglycosylases: Bacterial space-making autolysins.  Int. J. Biochem. Cell Biol.  40: 586-591.

  18. Mimi Tanimoto, Reynald Tremblay and Joseph Colasanti, 2008. Altered Gravitropic response, amyloplast sedimentation and circumnutation in the Arabidopsis shoot gravitropism 5 mutant are associated with reduced starch levels. Plant Molecular Biology 67, 57-59.

  19. McTaggart S, Crease T. Sequence length variation in the 18S rRNA expansion segment 43/e4 of Daphnia obtusa: ancient or recurring polymorphism? accepted to J. Molecular Evolution. May 2009.

  20. Moszczynska A, Locke S, McLaughlin JD, Marcogliese D, Crease T. 2009. Development of primers for the mitochondrial cytochrome c oxidase I gene in digenetic trematodes (Platyhelminthes) illustrates the challenge of barcoding parasitic helminths.  Molecular Ecology Resources 9 (Sppl 1):75-82.

  21. Glass S, Mozczynska A, Crease T. 2008.  The effect of transposon Pokeyinsertions on sequence variation in the 28S rRNA gene of Daphnia pulex.  Genome 51:988-1000.

  22. Valizadeh P, Crease T. 2008.  The association between breeding system and transposable element dynamics in Daphnia pulex. J. Molecular Evolution 66:643–654.

  23. Tuziak, S.M., Moghadam, H.K., and Danzmann, R.G. (in revision).  Genetic mapping of the ornithine decarboxylase (ODC) gene complex in rainbow trout. Cytogenet. Genome Res.

  24. Moghadam, H.K., Ferguson, M.M., and Danzmann, R.G. 2009. Comparative genomics and evolution of non-coding elements in rainbow trout. BMC Genomics (in press)

  25. Danzmann, R.G., Davidson, E.A., Ferguson, M.M., Gharbi, K., Hoyheim, B., Koop, B.F., Lien, S., Lubieniecki, K.P., Moghadam, H.K., Phillips, R.B., and W.S. Davidson. 2008.  Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon). BMC Genomics 9:557

  26. Chen, W., K. Bi and J. Fu. 2009. Frequent mitochondrial gene introgression among high elevation Tibetan megophryid frogs revealed by conflicting gene genealogies. Molecular Ecology (doi: 10.1111/j.1365-294X.2009.04258.x). Published online June 5, 2009.

  27. Bi, K.*, D. Deng*, M. K. A. Crosby*, and J. Fu. 2009. Characterization of microsatellite DNA markers in the Emei moustache toads (Leptobrachium boringii). Conservation Genetics (doi: 10.1007/s10592-009-9899-8). Published online March 24, 2009.

  28. Wang, Y., A. Zhan* and J. Fu. 2009. Testing historical phylogeographic inferences with contemporary gene flow data: Population genetic structure of the Qinghai toad-headed lizard. Journal of Zoology 278: 149-156

  29. CBOL Plant Working Group.2009Botanists Recommend a DNA Barcode for Land Plants. Accepted in PNAS in press.

  30. Aron J. Fazekas, Prasad R. Kesanakurti, Kevin S. Burgess, Diana M. Percy, Sean W. Graham, Spencer C. H. Barrett, Steven G. Newmaster, Mehrdad Hajibabaei, and Brian C. Husband. 2009. Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?  Molecular Ecology Resources 9: 130–139.

  31. Aron J. Fazekas, Kevin S. Burgess, Prasad R. Kesanakurti, Sean W. Graham, Brian C. Husband, Steven G. Newmaster, Diana M. Percy, Mehrdad Hajibabaei, Spencer C. H. Barrett. 2008. Multiple multilocus DNA barcode combinations from the plastid genome discriminate plant species equally well. PLOS One 3: e2802.

  32. Burgess, K.S., M. Morgan, and B.C. Husband. 2008. Interspecific seed discounting and the fertility cost of hybridization in an endangered species.  New Phytologist 177:276-284.

  33. Ramsey, J., Robertson, A. and B.C. Husband 2008. Rapid adaptive divergence in new world Achillea, an autopolyploid complex of ecological races. Evolution doi:10.1111/j.1558-5646.2007.00264.x

  34. Senatore, A., C. P. Trobacher, and J. S. Greenwood. 2009. Ricinosomes Predict Programmed Cell Death Leading to Anther Dehiscence in Tomato.  Plant Physiol. 149: 775-790.

  35. Sinclair, A. M., C. P. Trobacher, N. Mathur, J. S. Greenwood and J. Mathur.  2009.  Peroxule extension over ER-defined paths constitutes a rapid subcellular response to hydroxyl stress. Plant J. 2009 March (EPub ahead of print) DOI: 10.1111/j.1365-313X.2009.03863.x

  36. Trobacher, C.P.  Ethylene and Programmed Cell Death in Plants.  Botany (in press)

  37. Bertolini, AN. 2009.  Laser capture microdissection and mRNA analysis of germline stem cells during postnatal development in the ram.  University of Guelph Thesis.

  38. Wijekoon C, Goodwin PH, Hsiang T. 2008. The involvement of two epoxide hydrolase genes, NbEH1.1 and NbEH1.2, of Nicotiana benthamiana in the interaction with Colletotrichum destructivum, C. Orbiculare or Pseudomonas syringae pv. Tabaci. Functional Plant Biology 35:1112-1122

  39. Identification of polymorphisms in bovine TLR2 and CARD15,associations between CARD15 polymorphisms and milk somatic cell score in Canadian Holsteins, and functional relevance of SNP c.3020A>T. Pant SD, Schenkel FS, Leyva-Baca I, Sharma BS, and Karrow NA. 2008. Dev Biol (Basel) 132:247-53.

  40. Sharma, BS, Mount J, and Karrow NA. 2008. Functional characterization of a single nucleotide polymorphism in the 5' UTR region of the bovine toll-like receptor 4 gene. Dev Biol (Basel) 132:331-6.

  41. Westman, E.L., D.J. McNally, A. Charchoglyan, D. Brewer, R.A. Field, and Joseph S. Lam. 2009. Characterization of WbpB, WbpE, and WbpD, and reconstitution of a pathway for the biosynthesis of UDP-2,3-diacetamido-2,3-dideoxy-D-mannuronic acid in Pseudomonas aeruginosa. J. Biol. Chem. 284:11854-11862 (E pub ahead of print on Mar. 12, 2009)

  42. Gravelle, S.K., R.J. Barnes, J.K. Eibl, J.S. Lam, and M. Ulanova.  2009. Upregulation of integrin expression in lung adenocarcinoma cells caused by bacterial infection.  Innate Immunity, Accepted, Mar. 2009

  43. King, J.D., K.K.H. Poon, N.A. Webb, E.M. Anderson, D.J. McNally, J.-R. Brisson, P. Messner, R.M. Garavito, and Joseph S. Lam.  2009. Characterisation of GMD and RMD, GDP-D-rhamnose biosynthesis enzymes from Pseudomonas aeruginosa, and the structure of RMD from Aneurinibacillus thermoaerophilus.  FEBS J. 276:2686-2700.

  44. Westman, E.L. A. Preston, Robert A. Field, and Joseph S. Lam.  2008. Biosynthesis of a rare di-N-acetylated sugar in the lipopolysaccharide of both Pseudomonas aeruginosa and Bordetella pertussis occurs via an identical scheme despite different gene clusters.  J. Bacteriol. 190:6060-6069 (E-Pub ahead of print on 11 July 2008)

  45. Poon, K.K.H. Poon, E.L. Westman, E. Vinogradov, S. Jin, and Joseph S. Lam.  2008.  Functional characterization of MigA and WapR: putative rhamnosyltransferases involved in outer core oligosaccharide biosynthesis of Pseudomonas aeruginosa.  J. Bacteriol. 190:1857-1865.

  46. King, J.D. King, E.F. Mulrooney, E. Vinogradov, B. Kneidinger, K. Mead and J.S. Lam.  2008. lfnA from Pseudomonas aeruginosa O12 and wbuX from Escherichia coli O145 encode membrane-associated proteins and are required for expression of 2,6-dideoxy-2-acetamidino-L-galactose (L-FucNAm) in lipopolysaccharide O antigen.  J. Bacteriol. 190:1671-1679.

  47. Miller, W.L., M.J. Matewish, D.J. McNally, N. Ishiyama, E.M. Anderson, D. Brewer, J.-R. Brisson, A.M. Berghuis and J.S. Lam.  2008.  Flagellin glycosylation in Pseudomonas aeruginosa PAK requires the O-antigen biosynthesis enzyme WbpO.  J. Biol. Chem. 283:3507-3518.

  48. Lynn, D.H. 2009. [Operational Approaches to Species Identification in Microbial Eukaryotes – And Now DNA Barcodes]. In: Il Futuro di Darwin. La specie. L. Calabi (ed.). UTET Press, Torino. Ch. 3, pp. 45-63. [in Italian]

  49. Segade, P., Kher, C.P., Lynn, D.H., Iglesias, R. 2009. Morphological and molecular characterization of renal ciliates infecting farmed snails in Spain. Parasitology [doi:10.1017/S0031182009006040]

  50. Gentekaki, E., Lynn, D.H. 2009. High genetic diversity but no population structure of the peritrichous ciliate Carchesium polypinum in the Grand River Basin (North America) inferred from nuclear and mitochondrial markers. Appl. Environ. Microbiol., 75:3187-3195. [doi:10.1128/AEM.00178-09]

  51. Chantangsi, C., Lynn, D.H. 2008. Phylogenetic relationships within the genus Tetrahymena inferred from the cytochrome c oxidase subunit 1 and the small subunit ribosomal RNA genes. Mol. Phylogenet. Evol. 49:979-987.

  52. Strüder-Kypke, M.C., Lynn, D.H. 2008. Morphological versus molecular data – Phylogeny of tintinnid ciliates (Ciliophora, Choreotrichia) inferred from small subunit rRNA gene sequences. Denisia 23:417-424.

  53. Hesami, S.,  K. J. Allen, D. Metcalf, V. E. Ostland, J. I. MacInnes, and J. S. Lumsden. 2008.  Phenotypic and genotypic analysis of Flavobacterium psychrophilum isolates from Ontario salmonids with bacterial coldwater disease. Can. J. Microbiol. 54:619-629

  54. Lunden, S., Meng, B., Avery, J. Jr. and Qiu, W.  Characterization of a grapevine vein-clearing complex on Chardonnay. Submitted to European Journal of Plant Pathology (conditionally accepted, revision submitted)

  55. Rebelo, A. R., Niewiadomski, S., Prosser, S. W., Krell P. and Meng, B. (2008). Subcellular localization of the triple gene block proteins encoded by a foveavirus infecting grapevines. Virus Research 138, 57-69.

  56. Ho D, Merrill AR. Evidence for the Amphipathic Nature and Tilted Topology of Helices 4 and 5 in the Closed State of the Colicin E1 Channel (dagger). Biochemistry. 2009 Jan 21.

  57. Fieldhouse RJ, Merrill AR. Needle in the haystack: structure-based toxin discovery. Trends Biochem Sci. 2008 Nov;33(11):546-56.

  58. Jørgensen R, Wang Y, Visschedyk D, Merrill AR. The nature and character of the transition state for the ADP-ribosyltransferase reaction. EMBO Rep. 2008 Aug;9(8):802-9.

  59. Arnoldo A, Curak J, Kittanakom S, Chevelev I, Lee VT, Sahebol-Amri M, Koscik B, Ljuma L, Roy PJ, Bedalov A, Giaever G, Nislow C, Merrill AR, Lory S, Stagljar I. Identification of small molecule inhibitors of Pseudomonas aeruginosa exoenzyme S using a yeast phenotypic screen. PLoS Genet. 2008 Feb 29;4(2):e1000005.

  60. Zhang Y, Liu S, Lajoie G, Merrill AR. The role of the diphthamide-containing loop within eukaryotic elongation factor 2 in ADP-ribosylation by Pseudomonas aeruginosa exotoxin A. Biochem J. 2008 Jul 1;413(1):163-74.

  61. Jørgensen R, Purdy AE, Fieldhouse RJ, Kimber MS, Bartlett DH, Merrill AR. Cholix toxin, a novel ADP-ribosylating factor from Vibrio cholerae. J Biol Chem. 2008 Apr 18;283(16):10671-8.

  62. Gao A, Odumeru J, Raymond M, Hendrick S, Duffield T, Mutharia L. Comparison of milk culture, direct and nested polymerase chain reaction (PCR) with fecal culture based on samples from dairy herds infected with Mycobacterium avium subsp. paratuberculosis. Can J Vet Res. 2009 Jan;73(1):58-64.

  63. Romanova, N., Corredor, J.C. and Nagy, É. 2009. Detection and quantitation of fowl  adenovirus genome by a real-time PCR assay.  Journal of Virological Methods. 159:58-63.

  64. Corredor, J.C., Garceac, A., P.J. Krell and Nagy, É. 2008. Sequence comparison of the right end of fowl adenovirus genomes.  Virus Genes, 36:331-344

  65. Ojkic, D., Tuboly, T., Krell, P.J. and Nagy, É. 2008. Characterization of fowl              adenoviruses isolated in Ontario and Quebec, Canada. Can  J  Vet Re. 72:236-241.

  66. Xiao, H., Tattersall, E., Siddiqua, M., Cramer, G.R., and A. Nassuth. 2008.  CBF4 is a unique member of the CBF transcription factor family of Vitis vinifera and Vitis riparia. Plant, Cell and Environment 31: 1-10.

  67. Nabavi S., Nellimarla S. and R.N. Nazar 2008. Post-transcriptional regulation of the U3 small nucleolar RNA. J. Biol. Chem. 283: 21404-10.

  68. S. Nabavi and R.N. Nazar. 2008. Non-polyadenylated RNA polymerase II termination is induced by transcript cleavage. J. Biol. Chem. 283: 13601-10.

  69. K. Spasov and R.N. Nazar. 2008. RAC protein induces enzymatic access to the maturing 3’-end of the 25S rRNA in Schizosaccharomyces pombe. Biochem. Biophys. Res. Commun. 368: 374–378.

  70. Nabavi S, Nazar RN. 2008. U3 snoRNA promoter reflects the RNA's function in ribosome biogenesis. Curr. Genet. 54: 175-84.

  71. Chang A, Lim MH, Lee SW, Robb J, Nazar RN. 2008. Tomato pal gene family: Highly redundant but strongly underutilized. J. Biol. Chem. 283: 33591-601.

  72. H.O. Shittu, C.D.M. Castroverde, R.N. Nazar and J. Robb. 2008. Plant-endophyte interplay protects tomato against a virulent Verticillium. Planta. 229: 415-426.

  73. Alderman SL and Bernier NJ. 2009. Ontogeny of the corticotropin-releasing factor system in zebrafish.  Gen. Comp. Endocrinol. In Press. doi:10.1016/j.ygcen.2009.04.007    
  74. Gorissen M, Bernier NJ, Nabuurs SB, Flik G and Huising MO. 2009. Two divergent leptin paralogues in zebrafish (Danio rerio) that originate early in teleostean evolution. J. Endocrinol. 201: 329-339.
  75. Bernier NJ, Alderman SL and Bristow EN. 2008. Heads or tails? Stressor-specific expression of corticotropin-releasing factor and urotensin I in the preoptic area and caudal neurosecretory system of rainbow trout.  J. Endocrinol. 196: 637-648
  76. E.F. Fradin, Z. Zhang, J.C. Juarez Ayala, C.D.M. Castroverde, R.N. Nazar, J. Robb, C.-M. Liu and B.P.H.J. Thomma. 2009. Genetic Dissection of Verticillium Wilt Resistance Mediated by Tomato Ve1. Plant Physiol. 150: 320-332.

  77. H.O. Shittu, A.S. Shakir, R.N. Nazar and J. Robb. 2009. Endophyte-induced Verticillium protection in tomato is range-restricted. Plant Signaling & Behavior 4: 160-161.

  78. J. Robb, C.D.M. Castroverde, H.O. Shittu and R.N. Nazar. 2009.  Patterns of Defence Gene Expression in the Tomato-Verticillium Interaction. Botany in press.

  79. Newmaster, S.G., Murugesan, M., Ragupathy, S.,  Nallasamy, N. and V. Balasubramaniam. Ethnobotany Genomics study reveals three new species from the Velliangiri Holy Hills in the Nilgiri Biosphere Reserve, Western Ghats, India. Ethnobotany 21: 2-24. 2009.

  80. Newmaster, S.G and S. Ragupathy. Ethnobotany genomics – use of DNA barcoding to explore cryptic diversity in economically important plants. Journal of Science and Technology Vol.2 No 5: 2-8. 2009.

  81. Ragupathy, S and S.G. Newmaster. Valorizing the 'Irulas' traditional knowledge of medicinal plants in the Kodiakkarai Reserve Forest, India. Journal of Ethnobiology and Ethnomedicine 5:10 (doi:10.1186/1746-4269-5-10). 2009.

  82. Ragupathy, S., S.G. Newmaster, B. Velusamy, M. Murugesan. DNA barcoding discriminates a new cryptic grass species revealed in an ethnobotany study by the hill tribes of the Western Ghats in southern India. Molecular Ecological Resources 9(Supp. l.): 172–180. (doi: 10.1111/j.1755-0998.2009.02642.x). 2009.

  83. Newmaster, S.G and S. Ragupathy. Testing Plant Barcoding in a Sister Species Complex of  Pantropical Acacias (Mimosoideae, Fabaceae) Molecular Ecological Resources 9 (Suppl. 1), 164–171 (doi: 10.1111/j.1755-0998.2009.02641.x). 2009.

  84. Newmaster, S.G. and S. Ragupathy. A Botanical Renaissance: State-of-the-art DNA Barcoding Facilitates an Automated Identification Technology (AIT) System for Plants. International Journal of Computer Applications in Technology 35(1):50-60. 2009

  85. Newmaster, S.G, B. Velusamy, M. Murugesan and S. Ragupathy. Tripogon cope, a new species of Tripogon (Poaceae: Chloridoideae) in India with a Morphometric   analysis and synopsis of Tripogon in India. Systematic Botany 33(4): pp. 695–701. 2008.

  86. Fazekas, A., K.S. Burgess, P.R. Kesanakurti, D.M. Percy, M. Hajibabaei, S.W. Graham,   B.C. Husband, S.C.H. Barrett and S.G. Newmaster. Assessing the utility of coding and non-coding genomic regions for plant DNA barcoding. PLOS ONE 3: 1-12. 2008.

  87. Newmaster, S.G, Fazekas, A. Steeves, R. and Janovec, J.Testing Candidate Plant Barcode Regions inthe Myristicaceae. Molecular Ecology Notes 8: 480–490. 2008.

  88. Tiwari, K. and G. Paliyath (2009) : Microarray analysis of Ripening-regulated gene expression and its modulation by 1-MCP and Hexanal, CSPP conference, Simon Fraser Univ, British Columbia

  89. Sherif, S., G. Paliyath and J. Subramanian (2009) Molecular characterization of ERF proteins in peach reveals antagonistic and redundant effects to disease resistance. Annual Meeting for the Society for in vitro Biology, Charleston, South Carolina

  90. Reinprecht, Y., Wu, X., Luk-Labey, S., DaSilva, E., Martin, J. C. and K. P. Pauls. 2008. A microarray-based approach for identifying genes for resistance to Fusarium graminearum in maize (Zea mays L.). Cereal Research Communications, 36, Suppl. B: 253-259. (Third international conference on Fusarium Head Blight, Szeged, Hungary, September 1-5, 2008)

  91. Jiang, Y.-F., Kulkarni, R. R., Parreira, V. R., Prescott, J. F. 2009. Immunization of broiler chickens against Clostridium perfringens-induced necrotic enteritis using purified recombinant immunogenic proteins. Avian Dis. (in press).

  92. Chalmers, G., Bruce, H.L., Hunter, D.B., Parreira, V.R., Kulkarni, R.R., Jiang, Y-F., Prescott, J. F., Boerlin, P.2008. Multilocus sequence typing analysis of Clostridium perfringens isolates from necrotic enteritis outbreaks in broiler chickens. J. Clin. Microbiol. 46: 3957-3964. 

  93. Kulkarni, R.,  Parreira, V., Sharif, S., Prescott, J. F. 2008. Oral immunization of broiler chickens against necrotic enteritis with an attenuated Salmonella vaccine vector expressing Clostridium perfringensantigens. Vaccine 26:4194-4203.

  94. Kamrani, A., Parreira, V., Greenwood, J., Prescott, J.F. 2008. The prevalence of Bartonella, hemoplasma and Rickettsia felis in cats and in cat fleas in Ontario. Can. J. Vet. Res. 72: 411-410. 

  95. Kant S, Bi YM, Weretilnyk E, Barak S & Rothstein SJ (2008) The Arabidopsis Halophytic Relative, Thellungiella halophila, Tolerates Nitrogen limiting Conditions by Maintaining Growth, Nitrogen Uptake and Assimilation. Plant Physiol. 147:1168-80

  96. Lingard MJ, SK Gidda, S Bingham, SJ RothsteinRT Mullen, and RN Trelease. 2008. Arabidopsis PEX11 isoforms c, d and e, FIS1b, and DRP3A cooperatively participate in cell-cycle-associated replication of peroxisomes. Plant Cell 20: 1567-1585 

  97. charte, L., S. Rothstein, and M. Tollenaar (2008) The response of leaf photosynthesis and dry matter accumulation to nitrogen supply in an older and a newer maize hybrid. Crop Science, 48(2): p. 656-665.

  98. Peng ,M.,  Hudson, D., Schofield, A., Tsao, R., Yang, R., Gu, H., Bi, Y.-M.,  and Rothstein, S.J. (2008) Adaptation of Arabidopsis to nitrogen limitation involves induction of anthocyanin synthesis which is controlled by the NLA gene  Journal of Experimental Botany.  59: 2933 - 2944.

  99. R. Andrew Schofield, Yong-Mei Bi, Surya Kant, Steven J. Rothstein  Over expression of STP13, a hexose transporter improves plant growth and nitrogen use in Arabidopsis thaliana seedlings In press in Plant Cell and Environment.

  100. Mahmoud Yaish, Mingsheng Peng, and Steven Rothstein.  MBD9 Modulcates Plant Development through the Dual Pathways of DNA Methylation and Histone Acetylation. Plant Journal.  In press

  101. Billen, M. and Squires, EJ. 2009. J.Steroid biochem Mol.Biol 113:98-104

  102. Saleh-Lakha, S., Shannon, K.E., Goyer, C.M., Trevors, J.T., Zebarth, B.J., and Burton, D.L. 2008.  Nitric oxide reductase gene expression and nitrous oxide production in nitrate-grown Pseudomonas mandelii.  Applied and Environmental Microbiology.  74:  6876-6879.

  103. Saleh-Lakha, S., Shannon, K.E., Henderson, S.L., Goyer, C.M., Trevors, J.T., Zebarth, B.J., and Burton, D.L. 2009.  Effect of pH and temperature on denitrification gene expression and activity in Pseudomonas mandelii.  Applied and Environmental Microbiology.  75:  3903-3911.

  104. Lister, A., C. Regan, J. Van Zwol and G. Van Der Kraak.2009.  Inhibition of egg production in zebrafish by fluoxetine and municipal effluents: a mechanistic evaluation. Aquatic Toxicology (Accepted April 2009; 37 typed p; 10 Figs).

  105. Lister, A. and G. Van Der Kraak. Regulation of prostaglandin synthesis in the ovaries of sexually-mature zebrafish.  Molecular Reproduction and Development. (Accepted May  2009:  47 typed P; 11 Figs).

  106. Alsop, D.H., J.Matsumoto, S.B. Brown and G. Van Der Kraak. 2008.  Retinoid requirement in the reproduction of zebrafish. General and Comparative Endocrinology 156: 51-62.

  107. Lister, A.L. and G. Van Der Kraak. 2008. An investigation into the role of prostaglandins in zebrafish oocyte maturation and ovulation. General and Comparative Endocrinology 59: 46-57.

  108. Ford, R.C., A. Brunkan-LaMontagne, R. Collins, B.R. Clarke; R. Harris, J.H. Naismith, and C. Whitfield. 2009. Structure-function relationships of the outer membrane translocon Wza investigated by cryoelectron microscopy and mutagenesis. Journal of Structural Biology. in press.

  109. Cuthbertson, L., I. Mainprize, J.H. Naismith, and C. Whitfield. 2009. Export of extracellular polysaccharides in Gram-negative bacteria; the pivotal roles of OPX and PCP protein families. Microbiology and Molecular Biology Reviews. 73: 155-177.

  110. Larue, K., M. Kimber, R. Ford and C. Whitfield. 2009. Biochemical and structural analysis of bacterial O antigen chain length regulator proteins reveals a conserved quaternary structure. Journal of Biological Chemistry. 283: 7395-7403

  111. Kos, V., L. Cuthbertson, and C. Whitfield. 2009. The Klebsiella pneumoniae O2a antigen defines a second mechanism for O antigen ABC transporters. Journal of Biological Chemistry. 283: 284: 2947-2956.

  112. Tran, A.X., MS Trent, and C. Whitfield. 2008. The LptA protein of Escherichia coli is a periplasmic lipid A binding protein involved in the lipopolysaccharide export pathway. Journal of Biological Chemistry283: 20342-20349.

  113. Romantsov, T., L. Stalker, D.E. Culham, and J.M. Wood. 2008. Cardiolipin controls the osmotic stress response and the subcellular location of transporter ProP in Escherichia coli.  J.Biol.Chem.283:12314-12323.

  114. Tsatskis, Y., S.C. Kwok, E. Becker, C. Gill, M.N. Smith, R.A.B. Keates, R.S. Hodges and J.M. Wood. 2008. Core residue replacements cause coiled-coil orientation switching in vitro and in vivo: structure-function correlations for osmosensory transporter ProP. Biochem. 47:60-72.

  115. Culham, D.E., Y.I. Vernikovska, N. Tschowri, R.A.B. Keates, J.M. Wood and J.M. Boggs.  2008. Periplasmic loops of osmosensory transporter ProP in Escherichia coli are sensitive to osmolality.  Biochem. 47:13584-13593.

Patent

  • “Method of diagnosing FIV” - United States Patent and Trademark Office   60/468,667 filed 8 May 2003, co-inventors D. Bienzle & F. Reggeti; licensed to Idexx Laboratories, 1 Oct. 2004.