Publications

Riley AC, Ashlock DA, Graether SP. Evolution of the modular, disordered stress proteins known as dehydrins. PLoS One. 2019 Feb 6;14(2):e0211813. doi: 10.1371/journal.pone.0211813. eCollection 2019. PubMed PMID: 30726271; PubMed Central PMCID: PMC6364937.

Moore, Clayton & Meng, B. (2019). Prediction of the molecular boundary and functionality of novel viral AlkB domains using homology modelling and principal component analysis. Journal of General Virology. 10.1099/jgv.0.001237. 

Rajna, A., Gibling, H., Sarr, O., Matravadia, S., Holloway, G.P., & Mutch, D.M. (2018). Alpha-linolenic acid and linoleic acid differentially regulate the skeletal muscle secretome of obese Zucker rats. Physiological genomics, 50 8, 580-589.

Ekrem, Torbjorn & Stur, Elisabeth & Orton, Matthew & Adamowicz, Sarah. (2018). DNA barcode data reveal biogeographic trends in Arctic non-biting midges. Genome. 61. 10.1139/gen-2018-0100. 

Orton, M.G., May, J.A., Ly, W., Lee, D.J., & Adamowicz, S.J. (2018). Is molecular evolution faster in the tropics? Heredity, 1-12.

Malik AA, Veltri M, Boddington KF, Singh KK, Graether SP. Genome Analysis of Conserved Dehydrin Motifs in Vascular Plants. Front Plant Sci. 2017 May 4;8:709. doi: 10.3389/fpls.2017.00709. eCollection 2017. PubMed PMID: 28523013; PubMed Central PMCID: PMC5415607.

Linquist, S.S., Gregory, T.R., Elliott, T.A., Saylor, B., Kremer, S.C., & Cottenie, K. (2016). Yes! There are resilient generalizations (or "laws") in ecology. The Quarterly review of biology, 91 2, 119-31 .

Phillips, J.R., Gwiazdowski, R.A., Ashlock, D.A., & Hanner, R. (2015). An exploration of sufficient sampling effort to describe intraspecific DNA barcode haplotype diversity: examples from the ray-finned fishes (Chordata: Actinopterygii).

Metabolic and co-expression network-based analyses associated with nitrate response in rice; Viktoriya Coneva, Caitlin Simopoulos, José A Casaretto, Ashraf El-kereamy, David R Guevara, Jonathan Cohn, Tong Zhu, Lining Guo, Danny C Alexander, Yong-Mei Bi, Paul D McNicholas, Steven J Rothstein  BMC Genomics 15, 1056, 2014.

Identification of multiple phosphorylation sites on maize endosperm starch branching enzyme IIb, a key enzyme in amylopectin biosynthesis. Makhmoudova A, Williams D, Brewer D, Massey S, Patterson J, Silva A, Vassall KA, Liu F, Subedi S, Harauz G, Siu KW, Tetlow IJ, Emes MJ. J Biol Chem. 2014 Mar 28;289(13):9233-46.

Chiu, D., & Manjunath, R. (2014). Discovering functional patterns from pattern signatures of p53 protein sequence association structure. Neurocomputing, 145 (2014), 62-67, doi: 10.1016/j.neucom.2014.06.036.

Serum and adipose tissue amino acid homeostasis in the metabolically healthy obese. Badoud F, Lam KP, DiBattista A, Perreault M, Zulyniak MA, Cattrysse B, Stephenson S, Britz-McKibbin P, Mutch DM. J Proteome Res. 2014 Jul 3;13(7):3455-66

Inhibition of stearoyl-CoA desaturase-1 in differentiating 3T3-L1 preadipocytes upregulates elongase 6 and downregulates genes affecting triacylglycerol synthesis. Ralston JC, Badoud F, Cattrysse B, McNicholas PD, Mutch DM. Int J Obes (Lond). 2014 Nov;38(11):1449-56

Saylor, B., Elliott, T.A., Linquist, S.S., Kremer, S.C., Gregory, T.R., & Cottenie, K. (2013). A novel application of ecological analyses to assess transposable element distributions in the genome of the domestic cow, Bos taurus. Genome, 56 9, 521-33.

Linquist, S., Saylor, B., Cottenie, K., Elliott, T. A., Kremer, S. C. and Ryan Gregory, T. (2013), Distinguishing ecological from evolutionary approaches to transposable elements. Biol Rev, 88: 573-584. doi:10.1111/brv.12017

Bessonov, K., & Chiu, D. (2013). Functional analysis of NSF1 in wine yeast using interconnected correlation clustering and molecular analyses. PLoS ONE, 8 (10), 1-15, doi: 10.1371/journal.pone.0077192.

The effects of threonine phosphorylation on the stability and dynamics of the central molecular switch region of 18.5-kDa myelin basic protein. Vassall KA, Bessonov K, De Avila M, Polverini E, Harauz G. PLoS One. 2013 Jul 5;8(7):e68175

Ma, E.Y., Cameron, C.J., & Kremer, S.C. (2010). Classifying and scoring of molecules with the NGN: new datasets, significance tests, and generalization. BMC Bioinformatics.