PCR, Genotyping, Sequencing by species offered by the AHL

Note: Tests marked in italics are sent out to an external lab, external lab test prices will be charged; additional charges may be applied (transportation, sample handling fee, etc). Prices are subject to change without notice.

Species groups:

Avian

Bees

Avian

Test name - method	Code
16S rRNA - complete gene sequencing [1]	16sr
16S rRNA - partial gene sequencing [2]	16srp
18S rRNA - complete gene sequencing [3]	18srrna
APMV-1 (Avian paramyxovirus 1), food animal - PCR [4]	apmvmpf
APMV-1 (Avian paramyxovirus 1, NDV), companion/other - PCR [5]	apmvmpn
Astrovirus, avian - PCR [6]	astrrt
Avian adenovirus - genotyping [7]	aavse
Avian adenovirus - PCR [8]	fadvrrt
Avian bornavirus - PCR [9]	abvrrt
Avian encephalomyelitis virus - PCR [10]	aevrrt
Avian metapneumovirus type C (AMPV type C) - PCR [11]	ampvpcr
Avian reovirus - PCR [12]	reorrt
Brachyspira spp - PCR [13]	bspcr
Chicken anemia virus - PCR [14]	cavrrt
Chlamydia psittaci - PCR [15]	cppcr
Clostridium perfringens (types A,B,C,D,E), companion/other - genotyping [16]	cperg
Clostridium perfringens (types A,B,C,D,E), food animal - genotyping [17]	cperf
CO1 mtDNA - gene sequencing and analysis for species identification [18]	co1seq
Coxiella-like organism sequencing identification, avian [19]	acloid
Duck adenovirus 1 - PCR [20]	dadvrrt
Equine encephalitis virus (EEEV/WEEV), companion/other - PCR [21]	eeepn
Generic DNA sequencing [22]	gseq
IBDV - PCR [23]	ibdvrrt
IBDV (Infectious bursal disease virus) - genotyping, sequencing [24]	ibdse
IBV - genotyping by S1 gene sequencing and phylogenetic analysis [25]	ibvse
IBV (Infectious bronchitis virus) - PCR [26]	ibvrrt
ILTV - PCR [27]	iltvrrt
ILTV (Infectious laryngotracheitis virus, gallid herpesvirus) - sequencing [28]	iltse
Influenza A virus, H - gene sequencing [29]	inflseq
Influenza A virus, H5 - PCR [30]	h5pcr
Influenza A virus, H7 - PCR [31]	h7pcr
Influenza A virus, matrix - PCR [32]	inflpcr
Influenza A, H1N1/H3N2 Typing - PCR [33]	infltyp
Mycoplasma gallisepticum - PCR [34]	mgpcr
Mycoplasma iowae - PCR [35]	iowrt
Mycoplasma meleagridis - real-time PCR [36]	mmqpcr
Mycoplasma species - PCR [37]	mspppcr
Mycoplasma synoviae - PCR [38]	mspcr
Poxvirus - PCR [39]	poxrrt
Salmonella Enteritidis, food animal - PCR [40]	salef
Salmonella Typhimurium DT104, food animal - PCR [41]	d104f
Salmonella Typhimurium, food animal - PCR [42]	saltf
Trichomonas gallinae - PCR [43]	tgalpcr
West Nile virus, companion/other - PCR [44]	wnvpn
16S rRNA - complete gene sequencing [1]	16sr
16S rRNA - partial gene sequencing [2]	16srp

Bees

Test name - method	Code
Acute bee paralysis virus (ABPV) in honey bees - qRT-PCR [45]	abpv
Apocephalus borealis (zombie fly) in honey bees - qPCR detection [46]	apobor
Batrachochytrium dendrobatidis & B. salamandrivorans - PCR [47]	chytPCR
Black Queen Cell Virus (BQCV) in honey bees - qRT-PCR [48]	bqcv
Chronic bee paralysis virus (CBPV) in honey bees - qRT-PCR [49]	cbpv
Crithidia mellificae in honey bees - qPCR detection [50]	cmell
Deformed wing virus (DWV) in honey bees - qRT-PCR [51]	dwv
Israeli acute paralysis virus (IAPV) in honey bees - qRT-PCR [52]	iapv
Kashmir bee virus (KBV) in honey bees - qRT-PCR [53]	kbv
Lotmaria passim in honey bees - qPCR detection [54]	lpass
Nosema apis in honey bees - qPCR [55]	napis
Nosema ceranae in honey bees - qPCR [56]	nceran
Sacbrood virus (SBV) in honey bees - qRT-PCR [57]	sbv
Spiroplasma apis in honey bees - qPCR detection [58]	sapis
Spiroplasma melliferum in honey bees - qPCR detection [59]	smell
Vitellogenin biomarker levels in honey bees - qRT-PCR [60]	vtgpcr

Bovine

Test name - method	Code
16S rRNA - complete gene sequencing [1]	16sr
16S rRNA - partial gene sequencing [2]	16srp
18S rRNA - complete gene sequencing [3]	18srrna
Anaplasmosis, bovine - PCR [61]	xbovana
Bacillus anthracis - PCR [62]	xbacpcr
Bacillus anthracis (anthrax) - real-time PCR [63]	anthpcr
Bluetongue virus/Epizootic hemorrhagic disease virus - PCR [64]	btvehdv
Bovine abortion panel - PCR (BoHV-1/IBR, Leptospira, Neospora caninum) [65]	boabopc
Bovine neonatal enteric panel (includes Bovine coronavirus (BCoV) - PCR, Rotavirus ruminant Group A and B - PCR (rocopcr), Sucrose wet mount (sucwt), Bacterial culture, food/fiber producing animals (other than swine) (cultf, bsetup). [66]	bentpnl
Bovine respiratory virus panel - PCR (BoHV-1/IBR, BPIV-3, BRSV) [67]	brvp3
BVDV - PCR [68]	bvdrt
Cache Valley virus - PCR [69]	xcacpcr
Chlamydia abortus - PCR [70]	cpapcr
Chlamydia spp - PCR [71]	cpsppcr
Clostridium perfringens (types A,B,C,D,E), food animal - genotyping [17]	cperf
CO1 mtDNA - gene sequencing and analysis for species identification [18]	co1seq
Coxiella burnetii - PCR [18]	mcpcr
E. coli, ETEC (enterotoxigenic), food animal - genotyping [72]	ecolf
E. coli, VTEC (verotoxigenic) typing, O157/O111 (rfb), food animal - PCR [73]	ecopf
E. coli, VTEC, food animal - PCR [74]	vtecf
Generic DNA sequencing [22]	gseq
Giardia duodenalis - genotyping [75]	ggpcr
Haemoplasma, non-feline, non-canine - PCR [76]	hapcr2
IBRV (Infectious bovine rhinotracheitis virus, Bovine herpesvirus 1) - PCR [77]	ibrrt
Influenza A virus, H - gene sequencing [29]	inflseq
Influenza A virus, H5 - PCR [30]	h5pcr
Influenza A virus, H7 - PCR [31]	h7pcr
Influenza A virus, matrix - PCR [32]	inflpcr
Leptospira spp - PCR [78]	leptpcr
Malignant catarrhal fever (MCF) - PCR [79]	xmcfpcr
Mycobacterium paratuberculosis - PCR [80]	jpcr
Mycoplasma bovis - PCR [81]	mbpcr
Mycoplasma species - PCR [37]	mspppcr
Orf virus/bovine papular stomatitis virus - PCR [82]	orfbps
Rotavirus/coronavirus, bovine/equine - PCR. Includes Coronavirus - PCR, Rotavirus Group A and B - PCR [83]	rocopcr
Salmonella Enteritidis, food animal - PCR [40]	salef
Salmonella Typhimurium DT104, food animal - PCR [41]	d104f
Salmonella Typhimurium, food animal - PCR [42]	saltf
Schmallenberg virus - PCR [84]	xsbvp
Tritrichomonas foetus - PCR [85]	tfpcr

Canine

Test name - method	Code
16S rRNA - complete gene sequencing [1]	16sr
16S rRNA - partial gene sequencing [2]	16srp
18S rRNA - complete gene sequencing [3]	18srrna
Babesia - PCR [86]	xbabpcr
Bartonella (Rochalimaea) - PCR [86]	xbhp
Bartonella spp - PCR [87]	bsppcr
Brachyspira spp - PCR [13]	bspcr
Canid herpesvirus 1 (CaHV-1)-PCR; Canine adenovirus 2 (CAdV-2)-PCR; Canine parainfluenza virus (CPIV)-PCR [88]	chappcr
Canine distemper virus - PCR [89]	cdvmb
Canine distemper virus sequencing - PCR [90]	cdvse
Canine parvovirus 2/Feline panleukopenia virus sequencing [91]	cpfpvse
Canine/feline/mink parvovirus - PCR [92]	pv2mb
Chlamydia abortus - PCR [70]	cpapcr
Chlamydia spp - PCR [71]	cpsppcr
Clostridium perfringens (types A,B,C,D,E), companion/other - genotyping [16]	cperg
CO1 mtDNA - gene sequencing and analysis for species identification [18]	co1seq
Echinococcus multilocularis, E. granulosus and Taenia spp. - PCR panel [93]	echpcr
Ehrlichia canis - PCR [94]	xepcr
Generic DNA sequencing [22]	gseq
Giardia duodenalis - genotyping [75]	ggpcr
Influenza A virus, H - gene sequencing [29]	inflseq
Influenza A virus, H5 - PCR [30]	h5pcr
Influenza A virus, H7 - PCR [31]	h7pcr
Influenza A virus, matrix - PCR [32]	inflpcr
Leishmania - PCR [95]	xleishp
Leptospira spp - PCR [78]	leptpcr
Lymphocyte clonality - PCR Keller Lab OVC [96]	xclonkl
Mycoplasma haemocanis/haematoparvum - PCR [97]	hcpcr
Mycoplasma species - PCR [37]	mspppcr
Porcine respiratory coronavirus (PRCV) - PCR [98]	prcvpcr
Rotavirus, group A, B, C – PCR [99]	rotapcr
Sporothrix schenckii - RT-PCR [100]	xsporo

Caprine

Test name - method	Code
16S rRNA - complete gene sequencing [1]	16sr
16S rRNA - partial gene sequencing [2]	16srp
18S rRNA - complete gene sequencing [3]	18srrna
Bacillus anthracis - PCR [62]	xbacpcr
Cache Valley virus - PCR [69]	xcacpcr
Chlamydia abortus - PCR [70]	cpapcr
Chlamydia psittaci - PCR [15]	cppcr
Chlamydia spp - PCR [71]	cpsppcr
Clostridium perfringens (types A,B,C,D,E), food animal - genotyping [17]	cperf
CO1 mtDNA - gene sequencing and analysis for species identification [18]	co1seq
Coxiella burnetii - PCR [18]	mcpcr
E. coli, ETEC (enterotoxigenic), food animal - genotyping [72]	ecolf
E. coli, VTEC (verotoxigenic) typing, O157/O111 (rfb), food animal - PCR [73]	ecopf
E. coli, VTEC, food animal - PCR [74]	vtecf
Echinococcus multilocularis, E. granulosus and Taenia spp. - PCR panel [93]	echpcr
Generic DNA sequencing [22]	gseq
Influenza A virus, H - gene sequencing [29]	inflseq
Influenza A virus, H5 - PCR [30]	h5pcr
Influenza A virus, H7 - PCR [31]	h7pcr
Influenza A virus, matrix - PCR [32]	inflpcr
Leptospira spp - PCR [78]	leptpcr
Mycobacterium paratuberculosis - PCR [80]	jpcr
Mycoplasma species - PCR [37]	mspppcr
Orf virus/bovine papular stomatitis virus - PCR [82]	orfbps
Salmonella Enteritidis, food animal - PCR [40]	salef
Salmonella Typhimurium DT104, food animal - PCR [41]	d104f
Salmonella Typhimurium, food animal - PCR [42]	saltf
Schmallenberg virus - PCR [84]	xsbvp

Equine

Test name - method	Code
16S rRNA - complete gene sequencing [1]	16sr
16S rRNA - partial gene sequencing [2]	16srp
18S rRNA - complete gene sequencing [3]	18srrna
Bacillus anthracis - PCR [62]	xbacpcr
Bovine papillomavirus - PCR for fresh tissue [101]	bpvpcrf
Bovine papillomavirus - PCR for paraffin-embedded tissue [102]	bpvpcrp
Chlamydia abortus - PCR [70]	cpapcr
Chlamydia spp - PCR [71]	cpsppcr
Clostridium perfringens (types A,B,C,D,E), companion/other - genotyping [16]	cperg
CO1 mtDNA - gene sequencing and analysis for species identification [18]	co1seq
Coxiella burnetii - PCR [18]	mcpcr
Equid herpesvirus 1 - PCR [103]	ehv12
Equine arteritis virus (EAV, EVA) - PCR [104]	eavrt
Equine encephalitis virus (EEEV/WEEV), companion/other - PCR [21]	eeepn
Generic DNA sequencing [22]	gseq
Giardia duodenalis - genotyping [75]	ggpcr
Influenza A virus, H - gene sequencing [29]	inflseq
Influenza A virus, H5 - PCR [30]	h5pcr
Influenza A virus, H7 - PCR [31]	h7pcr
Influenza A virus, matrix - PCR [32]	inflpcr
Lawsonia intracellularis, companion/other - PCR [105]	lapcn
Leptospira spp - PCR [78]	leptpcr
Mycoplasma species - PCR [37]	mspppcr
Potomac horse fever - PCR [106]	phfpc
Rotavirus/coronavirus, bovine/equine - PCR. Includes Coronavirus - PCR, Rotavirus Group A and B - PCR [83]	rocopcr
Streptococcus equi ssp. equi - seM and szp gene strain sequencing typing [107]	sequity
Streptococcus equi ssp. equi, eqbE gene-PCR [108]	sequi
West Nile virus, companion/other - PCR [44]	wnvpn

Feline

Test name - method	Code
16S rRNA - complete gene sequencing [1]	16sr
16S rRNA - partial gene sequencing [2]	16srp
18S rRNA - complete gene sequencing [3]	18srrna
Bartonella (Rochalimaea) - PCR [109]	xbhp
Bartonella spp - PCR [87]	bsppcr
Brachyspira spp - PCR [13]	bspcr
Canine parvovirus 2/Feline panleukopenia virus sequencing [91]	cpfpvse
Canine/feline/mink parvovirus - PCR [92]	pv2mb
Chlamydia abortus - PCR [70]	cpapcr
Chlamydia spp - PCR [71]	cpsppcr
Clostridium perfringens (types A,B,C,D,E), companion/other - genotyping [16]	cperg
CO1 mtDNA - gene sequencing and analysis for species identification [18]	co1seq
Feline calicivirus/Felid herpesvirus 1 - PCR [110]	fcfhpcr
Generic DNA sequencing [22]	gseq
Influenza A virus, H - gene sequencing [29]	inflseq
Influenza A virus, H5 - PCR [30]	h5pcr
Influenza A virus, H7 - PCR [31]	h7pcr
Influenza A virus, matrix - PCR [32]	inflpcr
Leptospira spp - PCR [78]	leptpcr
Lymphocyte clonality - PCR Keller Lab OVC [96]	xclonkl
Mycoplasma haemocanis/haematoparvum - PCR [97]	hapcr
Mycoplasma species - PCR [37]	mspppcr
Porcine respiratory coronavirus (PRCV) - PCR [98]	prcvpcr
Sporothrix schenckii - RT-PCR [100]	xsporo
Tritrichomonas foetus - PCR [85]	tfpcr

Fish

Test name - method	Code
Batrachochytrium dendrobatidis & B. salamandrivorans - PCR [47]	chytPCR
Fish viral hemorrhagic septicemia virus (VHSV) - PCR [111]	vhsv
Infectious salmon anemia virus - PCR [112]	isavpcr
Myxobolus cerebralis (whirling disease pathogen) - PCR [113]	wdpcr

Ovine

Test name - method	Code
16S rRNA - complete gene sequencing [1]	16sr
16S rRNA - partial gene sequencing [2]	16srp
18S rRNA - complete gene sequencing [3]	18srrna
Bacillus anthracis - PCR [62]	xbacpcr
Cache Valley virus - PCR [69]	xcacpcr
Chlamydia abortus - PCR [70]	cpapcr
Chlamydia psittaci - PCR [15]	cppcr
Chlamydia spp - PCR [71]	cpsppcr
Clostridium perfringens (types A,B,C,D,E), food animal - genotyping [17]	cperf
CO1 mtDNA - gene sequencing and analysis for species identification [18]	co1seq
Coxiella burnetii - PCR [18]	mcpcr
E. coli, ETEC (enterotoxigenic), food animal - genotyping [72]	ecolf
E. coli, VTEC (verotoxigenic) typing, O157/O111 (rfb), food animal - PCR [73]	ecopf
E. coli, VTEC, food animal - PCR [74]	vtecf
Echinococcus multilocularis, E. granulosus and Taenia spp. - PCR panel [93]	echpcr
Generic DNA sequencing [22]	gseq
Influenza A virus, H - gene sequencing [29]	inflseq
Influenza A virus, H5 - PCR [30]	h5pcr
Influenza A virus, H7 - PCR [31]	h7pcr
Influenza A virus, matrix - PCR [32]	inflpcr
Leptospira spp - PCR [78]	leptpcr
Mycobacterium paratuberculosis - PCR [80]	jpcr
Mycoplasma species - PCR [37]	mspppcr
Orf virus/bovine papular stomatitis virus - PCR [82]	orfbps
Salmonella Enteritidis, food animal - PCR [40]	salef
Salmonella Typhimurium DT104, food animal - PCR [41]	d104f
Salmonella Typhimurium, food animal - PCR [42]	saltf
Schmallenberg virus - PCR [84]	xsbvp
Scrapie resistance PrP genotyping, codons 136, 137, 154, 171, 176 - Sequencing or PCR [114]	prp

Porcine

Test name - method	Code
16S rRNA - complete gene sequencing [1]	16sr
16S rRNA - partial gene sequencing [2]	16srp
18S rRNA - complete gene sequencing [3]	18srrna
Brachyspira hyodysenteriae - PCR [115]	bhpcr
Brachyspira pilosicoli -PCR [116]	bppcr
Brachyspira spp - PCR [13]	bspcr
Chlamydia abortus - PCR [70]	cpapcr
Chlamydia spp - PCR [71]	cpsppcr
Clostridium perfringens (types A,B,C,D,E), food animal - genotyping [17]	cperf
CO1 mtDNA - gene sequencing and analysis for species identification [18]	co1seq
Coxiella burnetii - PCR [18]	mcpcr
E. coli, ETEC (enterotoxigenic), food animal - genotyping [72]	ecolf
E. coli, VTEC (verotoxigenic) typing, O157/O111 (rfb), food animal - PCR [73]	ecopf
E. coli, VTEC, food animal - PCR [74]	vtecf
Generic DNA sequencing [22]	gseq
Haemophilus parasuis - PCR [117]	hpprt
Haemoplasma, non-feline, non-canine - PCR [76]	hapcr2
Influenza A virus, H - gene sequencing [29]	inflseq
Influenza A virus, H5 - PCR [30]	h5pcr
Influenza A virus, H7 - PCR [31]	h7pcr
Influenza A virus, matrix - PCR [32]	inflpcr
Influenza A, H1N1/H3N2 Typing - PCR [33]	infltyp
Lawsonia intracellularis, food animal - PCR [118]	lapcr
Leptospira spp - PCR [78]	leptpcr
Mycoplasma hyopneumoniae - gene sequencing typing [119]	p146seq
Mycoplasma hyopneumoniae - PCR [120]	mhpcr
Mycoplasma hyorhinis - PCR [121]	hrhpcr
Mycoplasma hyosynoviae - PCR [122]	hsypcr
Mycoplasma species - PCR [37]	mspppcr
Pasteurella multocida toxin, swine - PCR [123]	pmtpcr
PCV-2 - PCR [124]	pcv2rt
PEDV (Porcine epidemic diarrhea) - sequencing [125]	pedvse
Porcine coronavirus (PEDV, TGEV & PDCoV) - triplex PCR [126]	pcovpcr
Porcine hemagglutinating encephalomyelitis virus - PCR [127]	hevrt
Porcine parvovirus - PCR [128]	ppvrt
Porcine respiratory coronavirus (PRCV) - PCR [98]	prcvpcr
PRRSV, NorthAm/Eur, PCR [129]	prtqn
PRRSV, ORF5 - gene sequencing - PCR, same-owner comparison [130]	prrse
Rotavirus, group A, B, C – PCR [99]	rotapcr
Salmonella Enteritidis, food animal - PCR [40]	salef
Salmonella Typhimurium DT104, food animal - PCR [41]	d104f
Salmonella Typhimurium, food animal - PCR [42]	saltf
Seneca Valley virus - PCR [131]	svvpcr
Swine cytomegalovirus - PCR [132]	scmvrt

Other species

Test name - method	Code
16S rRNA - complete gene sequencing [1]	16sr
16S rRNA - partial gene sequencing [2]	16srp
18S rRNA - complete gene sequencing [3]	18srrna
Aleutian disease virus - PCR [133]	advpcr
Bacillus anthracis - PCR [62]	xbacpcr
Bluetongue virus/Epizootic hemorrhagic disease virus - PCR [64]	btvehdv
Borrelia burgdorferi and Anaplasma phagocytophilum - PCR [134]	lyPCR
Brachyspira spp - PCR [13]	bspcr
Canine distemper virus - PCR [89]	cdvmb
Canine distemper virus sequencing - PCR [90]	cdvse
Canine parvovirus 2/Feline panleukopenia virus sequencing [91]	cpfpvse
Canine/feline/mink parvovirus - PCR [92]	pv2mb
Chlamydia abortus - PCR [70]	cpapcr
Chlamydia spp - PCR [71]	cpsppcr
Clostridium perfringens (types A,B,C,D,E), companion/other - genotyping [16]	cperg
Clostridium perfringens (types A,B,C,D,E), food animal - genotyping [17]	cperf
CO1 mtDNA - gene sequencing and analysis for species identification [18]	co1seq
Coxiella burnetii - PCR [18]	mcpcr
Echinococcus multilocularis, E. granulosus and Taenia spp. - PCR panel [93]	echpcr
Elephant herpesvirus 1-7 - PCR [135]	eehvmb
Equine encephalitis virus (EEEV/WEEV), companion/other - PCR [21]	eeepn
Fish viral hemorrhagic septicemia virus (VHSV) - PCR [111]	vhsv
Generic DNA sequencing [22]	gseq
Giardia duodenalis - genotyping [75]	ggpcr
Haemoplasma, non-feline, non-canine - PCR [76]	hapcr2
Hantavirus (Seoul) - PCR [136]	xhanpcr
Infectious salmon anemia virus - PCR [112]	isavpcr
Influenza A virus, H - gene sequencing [29]	inflseq
Influenza A virus, H5 - PCR [30]	h5pcr
Influenza A virus, H7 - PCR [31]	h7pcr
Influenza A virus, matrix - PCR [32]	inflpcr
Influenza A, H1N1/H3N2 Typing - PCR [33]	infltyp
Lawsonia intracellularis, companion/other - PCR [105]	lapcn
Lawsonia intracellularis, food animal - PCR [118]	lapcr
Leishmania - PCR [95]	xleishp
Leptospira spp - PCR [78]	leptpcr
Malignant catarrhal fever (MCF) - PCR [79]	xmcfpcr
Mycobacterium paratuberculosis - PCR [80]	jpcr
Mycoplasma hyopneumoniae - gene sequencing typing [119]	p146seq
Mycoplasma species - PCR [37]	mspppcr
Ophidiomyces ophiodiicola - PCR [137]	oopcr
Potomac horse fever - PCR [106]	phfpc
Pseudogymnoascus destructans - PCR [138]	gdespcr
Rotavirus, group A, B, C – PCR [99]	rotapcr
Scrapie resistance PrP genotyping in deer (codon 96) - sequencing [139]	prpdeer
Scrapie resistance PrP genotyping in elk (codon 132) - sequencing [140]	prpelk

PCR, Genotyping, Sequencing by species offered by the AHL

Species groups:

Avian

Test name - method

Code

Bees

Test name - method

Code

Bovine

Test name - method

Code

Canine

Test name - method

Code

Caprine

Test name - method

Code

Equine

Test name - method

Code

Feline

Test name - method

Code

Fish

Test name - method

Code

Ovine

Test name - method

Code

Porcine

Test name - method

Code

Other species

Test name - method

Code