PCR, Genotyping, Sequencing by species offered by the AHL

Note: Tests marked in italics are sent out to an external lab, external lab test prices will be charged; additional charges may be applied (transportation, sample handling fee, etc). Prices are subject to change without notice.

Species groups:

Avian

Test name - method	Code
16S rRNA - complete gene sequencing	16sr
16S rRNA - partial gene sequencing	16srp
18S rRNA - complete gene sequencing	18srrna
APMV-1 (Avian paramyxovirus 1), food animal - PCR	apmvmpf
APMV-1 (Avian paramyxovirus 1, NDV), companion/other - PCR	apmvmpn
Astrovirus, avian - PCR	astrrt
Avian adenovirus - genotyping	aavse
Avian adenovirus - PCR	fadvrrt
Avian bornavirus - PCR	abvrrt
Avian encephalomyelitis virus - PCR	aevrrt
Avian metapneumovirus type C (AMPV type C) - PCR	ampvpcr
Avian reovirus - PCR	reorrt
Brachyspira spp - PCR	bspcr
Chicken anemia virus - PCR	cavrrt
Chlamydia psittaci - PCR	cppcr
Clostridium perfringens (types A,B,C,D,E), companion/other - genotyping	cperg
Clostridium perfringens (types A,B,C,D,E), food animal - genotyping	cperf
CO1 mtDNA - gene sequencing and analysis for species identification	co1seq
Coxiella-like organism sequencing identification, avian	acloid
Duck adenovirus 1 - PCR	dadvrrt
Equine encephalitis virus (EEEV/WEEV), companion/other - PCR	eeepn
Generic DNA sequencing	gseq
IBDV - PCR	ibdvrrt
IBDV (Infectious bursal disease virus) - genotyping, sequencing	ibdse
IBV - genotyping by S1 gene sequencing and phylogenetic analysis	ibvse
IBV (Infectious bronchitis virus) - PCR	ibvrrt
ILTV - PCR	iltvrrt
ILTV (Infectious laryngotracheitis virus, gallid herpesvirus) - sequencing	iltse
Influenza A virus, H - gene sequencing	inflseq
Influenza A virus, H5 - PCR	h5pcr
Influenza A virus, H7 - PCR	h7pcr
Influenza A virus, matrix - PCR	inflpcr
Influenza A, H1N1/H3N2 Typing - PCR	infltyp
Mycoplasma gallisepticum - PCR	mgpcr
Mycoplasma iowae - PCR	iowrt
Mycoplasma meleagridis - real-time PCR	mmqpcr
Mycoplasma species - PCR	mspppcr
Mycoplasma synoviae - PCR	mspcr
Poxvirus - PCR	poxrrt
Salmonella Enteritidis, food animal - PCR	salef
Salmonella Typhimurium DT104, food animal - PCR	d104f
Salmonella Typhimurium, food animal - PCR	saltf
Trichomonas gallinae - PCR	tgalpcr
West Nile virus, companion/other - PCR	wnvpn
16S rRNA - complete gene sequencing	16sr
16S rRNA - partial gene sequencing	16srp

Bees

Test name - method	Code
Acute bee paralysis virus (ABPV) in honey bees - qRT-PCR	abpv
Apocephalus borealis (zombie fly) in honey bees - qPCR detection	apobor
Batrachochytrium dendrobatidis & B. salamandrivorans - PCR	chytPCR
Black Queen Cell Virus (BQCV) in honey bees - qRT-PCR	bqcv
Chronic bee paralysis virus (CBPV) in honey bees - qRT-PCR	cbpv
Crithidia mellificae in honey bees - qPCR detection	cmell
Deformed wing virus (DWV) in honey bees - qRT-PCR	dwv
Israeli acute paralysis virus (IAPV) in honey bees - qRT-PCR	iapv
Kashmir bee virus (KBV) in honey bees - qRT-PCR	kbv
Lotmaria passim in honey bees - qPCR detection	lpass
Nosema apis in honey bees - qPCR	napis
Nosema ceranae in honey bees - qPCR	nceran
Sacbrood virus (SBV) in honey bees - qRT-PCR	sbv
Spiroplasma apis in honey bees - qPCR detection	sapis
Spiroplasma melliferum in honey bees - qPCR detection	smell
Vitellogenin biomarker levels in honey bees - qRT-PCR	vtgpcr

Bovine

Test name - method	Code
16S rRNA - complete gene sequencing	16sr
16S rRNA - partial gene sequencing	16srp
18S rRNA - complete gene sequencing	18srrna
Anaplasmosis, bovine - PCR	xbovana
Bacillus anthracis - PCR	xbacpcr
Bacillus anthracis (anthrax) - real-time PCR	anthpcr
Bluetongue virus/Epizootic hemorrhagic disease virus - PCR	btvehdv
Bovine abortion panel - PCR (BoHV-1/IBR, Leptospira, Neospora caninum)	boabopc
Bovine neonatal enteric panel (includes Bovine coronavirus (BCoV) - PCR, Rotavirus ruminant Group A and B - PCR (rocopcr), Sucrose wet mount (sucwt), Bacterial culture, food/fiber producing animals (other than swine) (cultf, bsetup).	bentpnl
Bovine respiratory virus panel - PCR (BoHV-1/IBR, BPIV-3, BRSV)	brvp3
BVDV - PCR	bvdrt
Cache Valley virus - PCR	xcacpcr
Chlamydia abortus - PCR	cpapcr
Chlamydia spp - PCR	cpsppcr
Clostridium perfringens (types A,B,C,D,E), food animal - genotyping	cperf
CO1 mtDNA - gene sequencing and analysis for species identification	co1seq
Coxiella burnetii - PCR	mcpcr
E. coli, ETEC (enterotoxigenic), food animal - genotyping	ecolf
E. coli, VTEC (verotoxigenic) typing, O157/O111 (rfb), food animal - PCR	ecopf
E. coli, VTEC, food animal - PCR	vtecf
Generic DNA sequencing	gseq
Giardia duodenalis - genotyping	ggpcr
Haemoplasma, non-feline, non-canine - PCR	hapcr2
IBRV (Infectious bovine rhinotracheitis virus, Bovine herpesvirus 1) - PCR	ibrrt
Influenza A virus, H - gene sequencing	inflseq
Influenza A virus, H5 - PCR	h5pcr
Influenza A virus, H7 - PCR	h7pcr
Influenza A virus, matrix - PCR	inflpcr
Leptospira spp - PCR	leptpcr
Malignant catarrhal fever (MCF) - PCR	xmcfpcr
Mycobacterium paratuberculosis - PCR	jpcr
Mycoplasma bovis - PCR	mbpcr
Mycoplasma species - PCR	mspppcr
Orf virus/bovine papular stomatitis virus - PCR	orfbps
Rotavirus/coronavirus, bovine/equine - PCR. Includes Coronavirus - PCR, Rotavirus Group A and B - PCR	rocopcr
Salmonella Enteritidis, food animal - PCR	salef
Salmonella Typhimurium DT104, food animal - PCR	d104f
Salmonella Typhimurium, food animal - PCR	saltf
Schmallenberg virus - PCR	xsbvp
Tritrichomonas foetus - PCR	tfpcr

Canine

Test name - method	Code
16S rRNA - complete gene sequencing	16sr
16S rRNA - partial gene sequencing	16srp
18S rRNA - complete gene sequencing	18srrna
Babesia - PCR	xbabpcr
Bartonella (Rochalimaea) - PCR	xbhp
Bartonella spp - PCR	bsppcr
Brachyspira spp - PCR	bspcr
Canid herpesvirus 1 (CaHV-1)-PCR; Canine adenovirus 2 (CAdV-2)-PCR; Canine parainfluenza virus (CPIV)-PCR	chappcr
Canine distemper virus - PCR	cdvmb
Canine distemper virus sequencing - PCR	cdvse
Canine parvovirus 2/Feline panleukopenia virus sequencing	cpfpvse
Canine/feline/mink parvovirus - PCR	pv2mb
Chlamydia abortus - PCR	cpapcr
Chlamydia spp - PCR	cpsppcr
Clostridium perfringens (types A,B,C,D,E), companion/other - genotyping	cperg
CO1 mtDNA - gene sequencing and analysis for species identification	co1seq
Echinococcus multilocularis, E. granulosus and Taenia spp. - PCR panel	echpcr
Ehrlichia canis - PCR	xepcr
Generic DNA sequencing	gseq
Giardia duodenalis - genotyping	ggpcr
Influenza A virus, H - gene sequencing	inflseq
Influenza A virus, H5 - PCR	h5pcr
Influenza A virus, H7 - PCR	h7pcr
Influenza A virus, matrix - PCR	inflpcr
Leishmania - PCR	xleishp
Leptospira spp - PCR	leptpcr
Lymphocyte clonality - PCR Keller Lab OVC	xclonkl
Mycoplasma haemocanis/haematoparvum - PCR	hcpcr
Mycoplasma species - PCR	mspppcr
Porcine respiratory coronavirus (PRCV) - PCR	prcvpcr
Rotavirus, group A, B, C – PCR	rotapcr
Sporothrix schenckii - RT-PCR	xsporo

Caprine

Test name - method	Code
16S rRNA - complete gene sequencing	16sr
16S rRNA - partial gene sequencing	16srp
18S rRNA - complete gene sequencing	18srrna
Bacillus anthracis - PCR	xbacpcr
Cache Valley virus - PCR	xcacpcr
Chlamydia abortus - PCR	cpapcr
Chlamydia psittaci - PCR	cppcr
Chlamydia spp - PCR	cpsppcr
Clostridium perfringens (types A,B,C,D,E), food animal - genotyping	cperf
CO1 mtDNA - gene sequencing and analysis for species identification	co1seq
Coxiella burnetii - PCR	mcpcr
E. coli, ETEC (enterotoxigenic), food animal - genotyping	ecolf
E. coli, VTEC (verotoxigenic) typing, O157/O111 (rfb), food animal - PCR	ecopf
E. coli, VTEC, food animal - PCR	vtecf
Echinococcus multilocularis, E. granulosus and Taenia spp. - PCR panel	echpcr
Generic DNA sequencing	gseq
Influenza A virus, H - gene sequencing	inflseq
Influenza A virus, H5 - PCR	h5pcr
Influenza A virus, H7 - PCR	h7pcr
Influenza A virus, matrix - PCR	inflpcr
Leptospira spp - PCR	leptpcr
Mycobacterium paratuberculosis - PCR	jpcr
Mycoplasma species - PCR	mspppcr
Orf virus/bovine papular stomatitis virus - PCR	orfbps
Salmonella Enteritidis, food animal - PCR	salef
Salmonella Typhimurium DT104, food animal - PCR	d104f
Salmonella Typhimurium, food animal - PCR	saltf
Schmallenberg virus - PCR	xsbvp

Equine

Test name - method	Code
16S rRNA - complete gene sequencing	16sr
16S rRNA - partial gene sequencing	16srp
18S rRNA - complete gene sequencing	18srrna
Bacillus anthracis - PCR	xbacpcr
Bovine papillomavirus - PCR for fresh tissue	bpvpcrf
Bovine papillomavirus - PCR for paraffin-embedded tissue	bpvpcrp
Chlamydia abortus - PCR	cpapcr
Chlamydia spp - PCR	cpsppcr
Clostridium perfringens (types A,B,C,D,E), companion/other - genotyping	cperg
CO1 mtDNA - gene sequencing and analysis for species identification	co1seq
Coxiella burnetii - PCR	mcpcr
Equid herpesvirus 1 - PCR	ehv12
Equine arteritis virus (EAV, EVA) - PCR	eavrt
Equine encephalitis virus (EEEV/WEEV), companion/other - PCR	eeepn
Generic DNA sequencing	gseq
Giardia duodenalis - genotyping	ggpcr
Influenza A virus, H - gene sequencing	inflseq
Influenza A virus, H5 - PCR	h5pcr
Influenza A virus, H7 - PCR	h7pcr
Influenza A virus, matrix - PCR	inflpcr
Lawsonia intracellularis, companion/other - PCR	lapcn
Leptospira spp - PCR	leptpcr
Mycoplasma species - PCR	mspppcr
Potomac horse fever - PCR	phfpc
Rotavirus/coronavirus, bovine/equine - PCR. Includes Coronavirus - PCR, Rotavirus Group A and B - PCR	rocopcr
Streptococcus equi ssp. equi - seM and szp gene strain sequencing typing	sequity
Streptococcus equi ssp. equi, eqbE gene-PCR	sequi
West Nile virus, companion/other - PCR	wnvpn

Feline

Test name - method	Code
16S rRNA - complete gene sequencing	16sr
16S rRNA - partial gene sequencing	16srp
18S rRNA - complete gene sequencing	18srrna
Bartonella (Rochalimaea) - PCR	xbhp
Bartonella spp - PCR	bsppcr
Brachyspira spp - PCR	bspcr
Canine parvovirus 2/Feline panleukopenia virus sequencing	cpfpvse
Canine/feline/mink parvovirus - PCR	pv2mb
Chlamydia abortus - PCR	cpapcr
Chlamydia spp - PCR	cpsppcr
Clostridium perfringens (types A,B,C,D,E), companion/other - genotyping	cperg
CO1 mtDNA - gene sequencing and analysis for species identification	co1seq
Feline calicivirus/Felid herpesvirus 1 - PCR	fcfhpcr
Generic DNA sequencing	gseq
Influenza A virus, H - gene sequencing	inflseq
Influenza A virus, H5 - PCR	h5pcr
Influenza A virus, H7 - PCR	h7pcr
Influenza A virus, matrix - PCR	inflpcr
Leptospira spp - PCR	leptpcr
Lymphocyte clonality - PCR Keller Lab OVC	xclonkl
Mycoplasma haemocanis/haematoparvum - PCR	hapcr
Mycoplasma species - PCR	mspppcr
Porcine respiratory coronavirus (PRCV) - PCR	prcvpcr
Sporothrix schenckii - RT-PCR	xsporo
Tritrichomonas foetus - PCR	tfpcr

Fish

Test name - method	Code
Batrachochytrium dendrobatidis & B. salamandrivorans - PCR	chytPCR
Fish viral hemorrhagic septicemia virus (VHSV) - PCR	vhsv
Infectious salmon anemia virus - PCR	isavpcr
Myxobolus cerebralis (whirling disease pathogen) - PCR	wdpcr

Ovine

Test name - method	Code
16S rRNA - complete gene sequencing	16sr
16S rRNA - partial gene sequencing	16srp
18S rRNA - complete gene sequencing	18srrna
Bacillus anthracis - PCR	xbacpcr
Cache Valley virus - PCR	xcacpcr
Chlamydia abortus - PCR	cpapcr
Chlamydia psittaci - PCR	cppcr
Chlamydia spp - PCR	cpsppcr
Clostridium perfringens (types A,B,C,D,E), food animal - genotyping	cperf
CO1 mtDNA - gene sequencing and analysis for species identification	co1seq
Coxiella burnetii - PCR	mcpcr
E. coli, ETEC (enterotoxigenic), food animal - genotyping	ecolf
E. coli, VTEC (verotoxigenic) typing, O157/O111 (rfb), food animal - PCR	ecopf
E. coli, VTEC, food animal - PCR	vtecf
Echinococcus multilocularis, E. granulosus and Taenia spp. - PCR panel	echpcr
Generic DNA sequencing	gseq
Influenza A virus, H - gene sequencing	inflseq
Influenza A virus, H5 - PCR	h5pcr
Influenza A virus, H7 - PCR	h7pcr
Influenza A virus, matrix - PCR	inflpcr
Leptospira spp - PCR	leptpcr
Mycobacterium paratuberculosis - PCR	jpcr
Mycoplasma species - PCR	mspppcr
Orf virus/bovine papular stomatitis virus - PCR	orfbps
Salmonella Enteritidis, food animal - PCR	salef
Salmonella Typhimurium DT104, food animal - PCR	d104f
Salmonella Typhimurium, food animal - PCR	saltf
Schmallenberg virus - PCR	xsbvp
Scrapie resistance PrP genotyping, codons 136, 137, 154, 171, 176 - Sequencing or PCR	prp

Porcine

Test name - method	Code
16S rRNA - complete gene sequencing	16sr
16S rRNA - partial gene sequencing	16srp
18S rRNA - complete gene sequencing	18srrna
Brachyspira hyodysenteriae - PCR	bhpcr
Brachyspira pilosicoli -PCR	bppcr
Brachyspira spp - PCR	bspcr
Chlamydia abortus - PCR	cpapcr
Chlamydia spp - PCR	cpsppcr
Clostridium perfringens (types A,B,C,D,E), food animal - genotyping	cperf
CO1 mtDNA - gene sequencing and analysis for species identification	co1seq
Coxiella burnetii - PCR	mcpcr
E. coli, ETEC (enterotoxigenic), food animal - genotyping	ecolf
E. coli, VTEC (verotoxigenic) typing, O157/O111 (rfb), food animal - PCR	ecopf
E. coli, VTEC, food animal - PCR	vtecf
Generic DNA sequencing	gseq
Haemophilus parasuis - PCR	hpprt
Haemoplasma, non-feline, non-canine - PCR	hapcr2
Influenza A virus, H - gene sequencing	inflseq
Influenza A virus, H5 - PCR	h5pcr
Influenza A virus, H7 - PCR	h7pcr
Influenza A virus, matrix - PCR	inflpcr
Influenza A, H1N1/H3N2 Typing - PCR	infltyp
Lawsonia intracellularis, food animal - PCR	lapcr
Leptospira spp - PCR	leptpcr
Mycoplasma hyopneumoniae - gene sequencing typing	p146seq
Mycoplasma hyopneumoniae - PCR	mhpcr
Mycoplasma hyorhinis - PCR	hrhpcr
Mycoplasma hyosynoviae - PCR	hsypcr
Mycoplasma species - PCR	mspppcr
Pasteurella multocida toxin, swine - PCR	pmtpcr
PCV-2 - PCR	pcv2rt
PEDV (Porcine epidemic diarrhea) - sequencing	pedvse
Porcine coronavirus (PEDV, TGEV & PDCoV) - triplex PCR	pcovpcr
Porcine hemagglutinating encephalomyelitis virus - PCR	hevrt
Porcine parvovirus - PCR	ppvrt
Porcine respiratory coronavirus (PRCV) - PCR	prcvpcr
PRRSV, NorthAm/Eur, PCR	prtqn
PRRSV, ORF5 - gene sequencing - PCR, same-owner comparison	prrse
Rotavirus, group A, B, C – PCR	rotapcr
Salmonella Enteritidis, food animal - PCR	salef
Salmonella Typhimurium DT104, food animal - PCR	d104f
Salmonella Typhimurium, food animal - PCR	saltf
Seneca Valley virus - PCR	svvpcr
Swine cytomegalovirus - PCR	scmvrt

Other species

Test name - method	Code
16S rRNA - complete gene sequencing	16sr
16S rRNA - partial gene sequencing	16srp
18S rRNA - complete gene sequencing	18srrna
Aleutian disease virus - PCR	advpcr
Bacillus anthracis - PCR	xbacpcr
Bluetongue virus/Epizootic hemorrhagic disease virus - PCR	btvehdv
Borrelia burgdorferi and Anaplasma phagocytophilum - PCR	lyPCR
Brachyspira spp - PCR	bspcr
Canine distemper virus - PCR	cdvmb
Canine distemper virus sequencing - PCR	cdvse
Canine parvovirus 2/Feline panleukopenia virus sequencing	cpfpvse
Canine/feline/mink parvovirus - PCR	pv2mb
Chlamydia abortus - PCR	cpapcr
Chlamydia spp - PCR	cpsppcr
Clostridium perfringens (types A,B,C,D,E), companion/other - genotyping	cperg
Clostridium perfringens (types A,B,C,D,E), food animal - genotyping	cperf
CO1 mtDNA - gene sequencing and analysis for species identification	co1seq
Coxiella burnetii - PCR	mcpcr
Echinococcus multilocularis, E. granulosus and Taenia spp. - PCR panel	echpcr
Elephant herpesvirus 1-7 - PCR	eehvmb
Equine encephalitis virus (EEEV/WEEV), companion/other - PCR	eeepn
Fish viral hemorrhagic septicemia virus (VHSV) - PCR	vhsv
Generic DNA sequencing	gseq
Giardia duodenalis - genotyping	ggpcr
Haemoplasma, non-feline, non-canine - PCR	hapcr2
Hantavirus (Seoul) - PCR	xhanpcr
Infectious salmon anemia virus - PCR	isavpcr
Influenza A virus, H - gene sequencing	inflseq
Influenza A virus, H5 - PCR	h5pcr
Influenza A virus, H7 - PCR	h7pcr
Influenza A virus, matrix - PCR	inflpcr
Influenza A, H1N1/H3N2 Typing - PCR	infltyp
Lawsonia intracellularis, companion/other - PCR	lapcn
Lawsonia intracellularis, food animal - PCR	lapcr
Leishmania - PCR	xleishp
Leptospira spp - PCR	leptpcr
Malignant catarrhal fever (MCF) - PCR	xmcfpcr
Mycobacterium paratuberculosis - PCR	jpcr
Mycoplasma hyopneumoniae - gene sequencing typing	p146seq
Mycoplasma species - PCR	mspppcr
Ophidiomyces ophiodiicola - PCR	oopcr
Potomac horse fever - PCR	phfpc
Pseudogymnoascus destructans - PCR	gdespcr
Rotavirus, group A, B, C – PCR	rotapcr
Scrapie resistance PrP genotyping in deer (codon 96) - sequencing	prpdeer
Scrapie resistance PrP genotyping in elk (codon 132) - sequencing	prpelk

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PCR, Genotyping, Sequencing by species offered by the AHL

Species groups:

Avian

Test name - method

Code

Bees

Test name - method

Code

Bovine

Test name - method

Code

Canine

Test name - method

Code

Caprine

Test name - method

Code

Equine

Test name - method

Code

Feline

Test name - method

Code

Fish

Test name - method

Code

Ovine

Test name - method

Code

Porcine

Test name - method

Code

Other species

Test name - method

Code

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